Preheat oven to 425 F. Prepare muffin tin with 12 liners.
In a large bowl mix flours, cooked quinoa, baking powder, baking soda, cinnamon and brown sugar.
In a separate bowl mix coconut oil, sweet potato, greek yogurt, eggs and vanilla extract.
Pour wet into the dry ingredients and mix until well combined.
Add chocolate chips and combine well.
Pour into muffin tins.
Bake for 5 minutes, then reduce the temperature to 350 F and bake another 20 - 25 minutes.